Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas Keane HTSlib - C library for reading/writing high-throughput sequencing data Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R 1000 Genome Project Data Processing Subgroup.īioinformatics. The Sequence Alignment/Map format and SAMtools. Quickcheck quickly check if SAM/BAM/CRAM file appears intactĬoverage alignment depth and percent coverageĪmpliconstats generate amplicon specific statsġ.4を消して1.9を入れ直したのですが、samtools sortコマンドは5%ほど速くなっていました。メモリ使用量もかなり減っているようです。 Targetcut cut fosmid regions (for fosmid pool only)Īmpliconclip clip oligos from the end of readsĬollate shuffle and group alignments by name Program: samtools (Tools for alignments in the SAM format)Ĭalmd recalculate MD/NM tags and '=' bases Sudo apt install libcurl4-openssl-dev #追記 Some great work by all the team to get this out and years of dev work to improve and harden these tools against the vagaries of real world compute environments. Pleased to announce a new samtools and bcftools paper to cover how samtools has evolved since version 0.1.19. See for links to tarballs and release notes. The long awaited release of 1.10 of Samtools, BCFtools and HTSlib is now available from the GitHub.
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